Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11983907 chr7:158855880 C/T 1.11E-16 173 25.4 41.8 3.17 KM Plot
PCPG rs11985185 chr8:53834494 T/C 0.000327 178 24.85 27.2 6.1 KM Plot
PCPG rs11985687 chr8:53832602 G/A 0.000327 178 24.85 27.2 6.1 KM Plot
PCPG rs11985689 chr8:53832615 G/A 0.000358 174 25.17 26.58 6.1 KM Plot
PCPG rs11986701 chr8:53833480 G/T 0.000327 178 24.85 27.2 6.1 KM Plot
PCPG rs11989221 chr8:121492910 G/A 4.11E-6 178 27.23 25 19.87 KM Plot
PCPG rs11993171 chr8:53832898 C/A 0.000327 178 24.85 27.2 6.1 KM Plot
PCPG rs11994578 chr8:121397993 C/T 4.06E-6 178 27.2 25.33 19.87 KM Plot
PCPG rs11995106 chr8:53834768 C/T 0.000327 178 24.85 27.2 6.1 KM Plot
PCPG rs11997538 chr8:53832663 A/C 0.000327 178 24.85 27.2 6.1 KM Plot
PCPG rs11997706 chr8:53833202 T/G 0.000359 176 24.85 27.2 6.1 KM Plot
PCPG rs11997774 chr8:53833370 T/A 0.000327 178 24.85 27.2 6.1 KM Plot
PCPG rs1199951 chr13:37647585 T/C 0.000339 177 4.17 24.23 25.87 KM Plot
PCPG rs1199952 chr13:37647866 A/G 0.000339 177 4.17 24.23 25.87 KM Plot
PCPG rs1199954 chr13:37648200 A/T 0.000312 178 25.87 24.47 4.17 KM Plot